Basic Information
Locus ID:
pistato.v30112070
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 51089018 | 51096494 | - | pistato.v30112070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 119,441.69 Da | 43.90 | 84.12 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48371 | ARM repeat | 118 | 513 | 5.35E-30 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 107 | 327 | 5.6E-38 | IPR011989 |
| SMART | SM00185 | arm_5 | 250 | 288 | 9.8 | IPR000225 |
| SMART | SM00185 | arm_5 | 149 | 190 | 12.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 207 | 247 | 82.0 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 759 | 853 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 884 | 913 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 525 | 565 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 565 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 826 | 840 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 760 | 788 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_031263853.1 | E3 ubiquitin-protein ligase UPL3-like [Pistacia vera] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7N2RDU6 | HECT-type E3 ubiquitin transferase OS=Quercus lobata OX=97700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology