Basic Information
Locus ID:
pistato.v30110200
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 45301116 | 45311995 | - | pistato.v30110200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 196,165.27 Da | 46.77 | 86.50 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1522 | 1805 | 2.4E-31 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 188 | 682 | 6.84E-39 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1466 | 1801 | 2.22E-45 | IPR035983 |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 1741 | 1762 | 7.9E-9 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1763 | 1795 | 7.9E-9 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1428 | 1650 | 1.1E-33 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 178 | 481 | 2.3E-53 | IPR011989 |
| SMART | SM00185 | arm_5 | 220 | 261 | 39.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 303 | 343 | 61.0 | IPR000225 |
| SMART | SM00119 | hect_3 | 1485 | 1822 | 1.0E-6 | IPR000569 |
| SMART | SM00185 | arm_5 | 346 | 384 | 9.8 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1498 | 1801 | 20.327154 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 689 | 708 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1536 | 1557 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1081 | 1095 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1003 | 1043 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 999 | 1108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 721 | 743 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1279 | 1313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 689 | 743 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1139 | 1163 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_031263853.1 | E3 ubiquitin-protein ligase UPL3-like [Pistacia vera] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7I844 | HECT-type E3 ubiquitin transferase OS=Acer yangbiense OX=1000413 GN=EZV62_011756 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology