Basic Information
Locus ID:
pistato.v30110000
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Short Name:
HPR
Description:
Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 45127049 | 45128442 | - | pistato.v30110000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 18,131.19 Da | 51.91 | 80.31 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18322 | BTB_POZ_SKP1 | 9 | 124 | 1.28003E-57 | - |
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 8 | 64 | 2.3E-23 | IPR016073 |
| Pfam | PF01466 | Skp1 family, dimerisation domain | 110 | 157 | 3.9E-29 | IPR016072 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 82 | 157 | 3.14E-32 | IPR036296 |
| SUPERFAMILY | SSF54695 | POZ domain | 9 | 65 | 1.52E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 3 | 159 | 5.9E-69 | IPR011333 |
| SMART | SM00512 | skp1_3 | 7 | 109 | 5.1E-45 | IPR001232 |
| PIRSF | PIRSF028729 | SCF_Skp | 1 | 159 | 6.8E-64 | IPR016897 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko00260 (Glycine, serine and threonine metabolism)
map00260 (Glycine, serine and threonine metabolism)
ko00630 (Glyoxylate and dicarboxylate metabolism)
map00630 (Glyoxylate and dicarboxylate metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42190.1 | E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein. Similar to SKP1 in yeast and humans which are involved in mitotic cell cycle control and ubiquitin mediated proteolysis. | 0 |
| RefSeq | XP_031250501.1 | SKP1-like protein 1A [Pistacia vera] | 0 |
| Q9FHW7 | SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8ZBF3 | SKP1-like protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology