Basic Information
Locus ID:
pistato.v30109870
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 43878333 | 43883829 | - | pistato.v30109870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.49 | 22,232.75 Da | 32.06 | 89.33 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 33 | 75 | 1.2376E-20 | - |
| Pfam | PF04564 | U-box domain | 32 | 100 | 1.3E-16 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 20 | 105 | 2.12E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 8 | 107 | 4.7E-26 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 32 | 95 | 2.3E-22 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 28 | 102 | 31.209396 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66160.1 | CYS, MET, PRO, and GLY protein 1. | 0 |
| RefSeq | XP_044467002.1 | U-box domain-containing protein 21-like [Mangifera indica] | 0 |
| Q9C8D1 | U-box domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=PUB20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5D2N392 | RING-type E3 ubiquitin transferase OS=Gossypium tomentosum OX=34277 GN=ES332_A12G307600v1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology