Basic Information
Locus ID:
pistato.v30101500
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 1177260 | 1182126 | - | pistato.v30101500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.03 | 58,058.85 Da | 50.00 | 73.60 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 1 | 94 | 2.10858E-54 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 4 | 84 | 3.8E-15 | IPR001650 |
| Pfam | PF09382 | RQC domain | 213 | 291 | 4.6E-10 | IPR018982 |
| Pfam | PF16124 | RecQ zinc-binding | 96 | 177 | 3.8E-16 | IPR032284 |
| Pfam | PF00570 | HRDC domain | 334 | 402 | 8.0E-16 | IPR002121 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 213 | 287 | 1.5E-6 | IPR036390 |
| SUPERFAMILY | SSF47819 | HRDC-like | 333 | 405 | 2.07E-14 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2 | 188 | 2.87E-44 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 211 | 296 | 3.4E-8 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 181 | 5.5E-54 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 326 | 410 | 1.2E-23 | IPR044876 |
| SMART | SM00490 | helicmild6 | 4 | 85 | 4.5E-28 | IPR001650 |
| SMART | SM00956 | RQC_2 | 188 | 289 | 2.1E-4 | IPR018982 |
| SMART | SM00341 | hrdc7 | 330 | 412 | 3.7E-5 | IPR002121 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 330 | 412 | 17.825607 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1 | 140 | 17.096676 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 437 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_031273602.1 | ATP-dependent DNA helicase Q-like 4A isoform X1 [Pistacia vera] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | V4SBW7 | DNA helicase OS=Citrus clementina OX=85681 GN=CICLE_v10000077mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology