Basic Information
Locus ID:
pistato.v30100540
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
disease resistance
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 39389716 | 39396452 | - | pistato.v30100540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 109,517.56 Da | 42.01 | 98.98 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 631 | 690 | 4.6E-7 | IPR001611 |
| Pfam | PF00931 | NB-ARC domain | 193 | 405 | 1.1E-44 | IPR002182 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 186 | 441 | 1.6E-40 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 501 | 925 | 5.1E-34 | - |
| Gene3D | G3DSA:1.10.8.430 | - | 339 | 423 | 8.9E-15 | IPR042197 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 538 | 950 | 1.0E-42 | IPR032675 |
| Gene3D | G3DSA:3.40.50.300 | - | 126 | 335 | 3.2E-29 | IPR027417 |
| SMART | SM00369 | LRR_typ_2 | 629 | 652 | 17.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 584 | 607 | 0.36 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 586 | 608 | 7.380825 | IPR001611 |
| PRINTS | PR00364 | Disease resistance protein signature | 650 | 666 | 2.4E-19 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 281 | 295 | 2.4E-19 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 373 | 387 | 2.4E-19 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 207 | 222 | 2.4E-19 | - |
| Coils | Coil | Coil | 58 | 106 | - | - |
| Coils | Coil | Coil | 463 | 490 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27190.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_031255448.1 | probable disease resistance protein At4g27220 [Pistacia vera] | 0 |
| Q9T048 | Disease resistance protein At4g27190 OS=Arabidopsis thaliana OX=3702 GN=At4g27190 PE=2 SV=1 | 0 | |
| TrEMBL | V4T8H5 | AAA domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10018706mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 40 | pistato.v30030420, pistato.v30098710, pistato.v30098730 ... |