Basic Information
Locus ID:
pistato.v30099960
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
disease resistance
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 37865540 | 37880137 | + | pistato.v30099960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 279,845.38 Da | 45.89 | 96.45 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 162 | 370 | 1.8E-37 | IPR002182 |
| Pfam | PF00931 | NB-ARC domain | 1528 | 1738 | 2.9E-40 | IPR002182 |
| Pfam | PF13855 | Leucine rich repeat | 596 | 653 | 9.6E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 1966 | 2023 | 1.9E-6 | IPR001611 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1522 | 1773 | 1.26E-43 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 1871 | 2258 | 7.82E-34 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 496 | 901 | 1.62E-33 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 2217 | 2398 | 1.02E-5 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 153 | 403 | 7.87E-43 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2075 | 2267 | 2.1E-13 | IPR032675 |
| Gene3D | G3DSA:3.40.50.300 | - | 140 | 300 | 6.3E-28 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2290 | 2427 | 1.8E-6 | IPR032675 |
| Gene3D | G3DSA:1.10.8.430 | - | 1673 | 1757 | 4.9E-17 | IPR042197 |
| Gene3D | G3DSA:1.10.8.430 | - | 304 | 394 | 6.1E-16 | IPR042197 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1840 | 2069 | 4.5E-31 | IPR032675 |
| Gene3D | G3DSA:3.40.50.300 | - | 1515 | 1670 | 4.7E-28 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 502 | 925 | 1.1E-44 | IPR032675 |
| SMART | SM00382 | AAA_5 | 172 | 306 | 0.26 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1541 | 1675 | 0.34 | IPR003593 |
| SMART | SM00369 | LRR_typ_2 | 1964 | 1987 | 9.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 594 | 617 | 7.0 | IPR003591 |
| PRINTS | PR00364 | Disease resistance protein signature | 1707 | 1721 | 1.7E-18 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 1985 | 2001 | 1.7E-18 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 1544 | 1559 | 1.7E-18 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 1615 | 1629 | 1.7E-18 | - |
| Coils | Coil | Coil | 1108 | 1128 | - | - |
| Coils | Coil | Coil | 1007 | 1031 | - | - |
| Coils | Coil | Coil | 26 | 92 | - | - |
| Coils | Coil | Coil | 1188 | 1208 | - | - |
| Coils | Coil | Coil | 1324 | 1344 | - | - |
| Coils | Coil | Coil | 1404 | 1452 | - | - |
| Coils | Coil | Coil | 1296 | 1316 | - | - |
| Coils | Coil | Coil | 1216 | 1236 | - | - |
| Coils | Coil | Coil | 965 | 992 | - | - |
| Coils | Coil | Coil | 1797 | 1817 | - | - |
| Coils | Coil | Coil | 428 | 448 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27190.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_031254302.1 | uncharacterized protein LOC116112287 [Pistacia vera] | 0 |
| Q9T048 | Disease resistance protein At4g27190 OS=Arabidopsis thaliana OX=3702 GN=At4g27190 PE=2 SV=1 | 0 | |
| TrEMBL | V4T8H5 | AAA domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10018706mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 40 | pistato.v30030420, pistato.v30098710, pistato.v30098730 ... |