Basic Information
Locus ID:
pistato.v30099740
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Belongs to the disease resistance NB-LRR family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 37577500 | 37588719 | + | pistato.v30099740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 121,117.29 Da | 43.64 | 96.14 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 561 | 620 | 1.5E-8 | IPR001611 |
| Pfam | PF00931 | NB-ARC domain | 266 | 448 | 6.8E-40 | IPR002182 |
| SUPERFAMILY | SSF52047 | RNI-like | 750 | 1007 | 1.18E-13 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 252 | 450 | 9.14E-36 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 464 | 859 | 2.11E-30 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 433 | 856 | 4.9E-35 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 857 | 1019 | 3.6E-11 | IPR032675 |
| Gene3D | G3DSA:3.40.50.300 | - | 245 | 410 | 5.5E-30 | IPR027417 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 539 | 560 | 7.041994 | IPR001611 |
| PRINTS | PR00364 | Disease resistance protein signature | 282 | 297 | 3.1E-15 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 580 | 596 | 3.1E-15 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 356 | 370 | 3.1E-15 | - |
| Coils | Coil | Coil | 340 | 360 | - | - |
| Coils | Coil | Coil | 26 | 92 | - | - |
| Coils | Coil | Coil | 140 | 188 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61190.4 | - | 0 |
| RefSeq | XP_031286052.1 | uncharacterized protein LOC116144759 [Pistacia vera] | 0 |
| O22727 | Probable disease resistance protein At1g61190 OS=Arabidopsis thaliana OX=3702 GN=At1g61190 PE=3 SV=1 | 0 | |
| TrEMBL | A0A067DPT4 | AAA domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g037851mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 40 | pistato.v30030420, pistato.v30098710, pistato.v30098730 ... |