Basic Information
Locus ID:
pistato.v30099680
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 37431539 | 37437021 | - | pistato.v30099680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 56,768.08 Da | 43.75 | 88.65 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 305 | 339 | 0.01 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 214 | 493 | 4.71E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 363 | 523 | 2.6E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 113 | 352 | 7.8E-22 | IPR015943 |
| SMART | SM00320 | WD40_4 | 257 | 297 | 7.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 300 | 339 | 1.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 390 | 432 | 7.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 354 | 388 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 203 | 241 | 190.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 307 | 341 | 10.021053 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 307 | 348 | 12.814306 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 525 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.2 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_044467211.1 | protein TOPLESS-RELATED PROTEIN 2-like isoform X1 [Mangifera indica] | 0 |
| Q0J7U6 | Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067E9L8 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0011592mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg11622 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000011711, gene:ENSEOMG00000016261 ... |
| Anacardiaceae | Pistacia vera | 5 | pistato.v30099560, pistato.v30099680, pistato.v30099790 ... |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G007850 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103700149 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_01.1301.V1.1, AsparagusV1_01.131.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G19082 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028234 |
| Poaceae | Echinochloa crus-galli | 1 | CH08.491 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G054200 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr20G011510 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g25450 |
| Salicaceae | Populus euphratica | 1 | populus_peu12947 |
| Solanaceae | Solanum chilense | 3 | SOLCI001994800, SOLCI005587600, SOLCI005587700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107013672, gene-LOC107014302 |