Basic Information
Locus ID:
pistato.v30099540
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 37181525 | 37187698 | - | pistato.v30099540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 51,002.94 Da | 38.98 | 77.38 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 34 | 86 | 0.002 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 36 | 452 | 3.66E-17 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 330 | 465 | 8.9E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 256 | 1.2E-16 | IPR015943 |
| SMART | SM00320 | WD40_4 | 353 | 387 | 59.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 45 | 86 | 2.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 389 | 431 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 165 | 199 | 73.0 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_044467221.1 | protein TOPLESS-RELATED PROTEIN 2-like isoform X2 [Mangifera indica] | 0 |
| Q0J7U6 | Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2H5P917 | Protein TOPLESS OS=Citrus unshiu OX=55188 GN=CUMW_114890 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for pistato.v30099540.