Basic Information
Locus ID:
pistato.v30099140
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Belongs to the disease resistance NB-LRR family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 35911085 | 35916634 | + | pistato.v30099140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 108,780.91 Da | 45.76 | 98.99 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 175 | 386 | 9.8E-44 | IPR002182 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 164 | 420 | 1.22E-42 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 482 | 919 | 1.05E-29 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 497 | 728 | 2.0E-25 | IPR032675 |
| Gene3D | G3DSA:3.40.50.300 | - | 151 | 316 | 1.9E-26 | IPR027417 |
| Gene3D | G3DSA:1.10.8.430 | - | 320 | 405 | 5.6E-15 | IPR042197 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 729 | 931 | 7.7E-10 | IPR032675 |
| PRINTS | PR00364 | Disease resistance protein signature | 188 | 203 | 2.5E-19 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 636 | 652 | 2.5E-19 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 354 | 368 | 2.5E-19 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 262 | 276 | 2.5E-19 | - |
| Coils | Coil | Coil | 444 | 464 | - | - |
| Coils | Coil | Coil | 34 | 100 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27190.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_031280971.1 | probable disease resistance protein At4g27220 isoform X1 [Pistacia vera] | 0 |
| Q9T048 | Disease resistance protein At4g27190 OS=Arabidopsis thaliana OX=3702 GN=At4g27190 PE=2 SV=1 | 0 | |
| TrEMBL | V4T8H5 | AAA domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10018706mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 40 | pistato.v30030420, pistato.v30098710, pistato.v30098730 ... |