Basic Information
Locus ID:
pistato.v30095710
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 29865917 | 29868293 | - | pistato.v30095710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.58 | 16,908.92 Da | 57.32 | 57.04 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06220 | U1 zinc finger | 5 | 37 | 3.3E-9 | IPR013085 |
| SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 4 | 50 | 1.13E-14 | IPR036236 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 54 | 78 | 5.36E-6 | IPR036855 |
| Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 3 | 55 | 1.1E-10 | - |
| SMART | SM00451 | ZnF_U1_5 | 3 | 38 | 8.2E-4 | IPR003604 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 53 | 81 | 12.089031 | IPR000571 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 152 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G26749.1 | C2H2 and C2HC zinc fingers superfamily protein. | 0 |
| RefSeq | XP_031252450.1 | zinc finger CCCH domain-containing protein 3 [Pistacia vera] | 0 |
| Q0JP11 | Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0252200 PE=2 SV=2 | 0 | |
| TrEMBL | V4SWC1 | C3H1-type domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10012993mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1369 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10257, gene_10258 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005361 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g079780 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17587, Sbi_jg62257 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg836 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007396 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24095, Sgl29276 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000009028, gene:ENSEOMG00000028803 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4BG0004820 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30095710 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709633 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1163.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G11582 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G26749.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005088m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g21240.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g039020.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0479 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0490 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g06700 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g16850 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1646 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03384, Lb2G10955 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.1009, CH02.1185, CH07.2692 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0005530, gene-QOZ80_1BG0054150 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0252620.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_052067 |
| Poaceae | Oryza coarctata | 2 | Oco01G006730, Oco02G007010 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g14870.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G102000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702781, Pt_Chr0702784 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G025950, Chr05G003710, Chr08G002850 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G301100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG022500, gene_TRIDC3BG027650 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G164000.1, TraesCS3B02G201900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb333750_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-32408, nbis-gene-56756 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7423 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG08.1264, evm.TU.LG08.1267, evm.TU.LG09.1349 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g13100 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.29 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-8253 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3798 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5126 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.18 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011325 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7940 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-26 |
| Salicaceae | Populus euphratica | 1 | populus_peu15570 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598493 |
| Solanaceae | Solanum chilense | 1 | SOLCI003275700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013830 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12922 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2121 |
| Zosteraceae | Zostera marina | 1 | Zosma01g37060.v3.1 |