Basic Information
Locus ID:
pistato.v30095640
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 29755519 | 29762283 | + | pistato.v30095640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 62,195.22 Da | 48.02 | 61.98 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 101 | 151 | 4.6627E-16 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 240 | 291 | 4.5E-10 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 170 | 232 | 2.5E-15 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 246 | 293 | 9.42E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 97 | 179 | 4.71E-19 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 519 | 546 | 6.28E-6 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 170 | 239 | 8.65E-13 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 228 | 477 | 1.7E-78 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 95 | 184 | 2.3E-18 | IPR013083 |
| Gene3D | G3DSA:4.10.1060.10 | - | 512 | 546 | 3.9E-6 | - |
| SMART | SM00547 | zf_4 | 521 | 545 | 1.5E-5 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 236 | 300 | 0.024 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 170 | 232 | 2.1E-24 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 101 | 147 | 9.214112 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 97 | 304 | 48.954124 | IPR044066 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 519 | 546 | 8.953225 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 523 | 542 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 515 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_031249338.1 | probable E3 ubiquitin-protein ligase ARI8 [Pistacia vera] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067E338 | RBR-type E3 ubiquitin transferase OS=Citrus sinensis OX=2711 GN=CISIN_1g007642mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology