Basic Information
Locus ID:
pistato.v30092700
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 21722725 | 21730193 | + | pistato.v30092700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 65,227.07 Da | 47.04 | 88.45 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 77 | 123 | 8.7E-23 | IPR041101 |
| Pfam | PF18511 | F-box | 18 | 58 | 5.4E-22 | IPR041567 |
| Pfam | PF13516 | Leucine Rich repeat | 491 | 509 | 0.33 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 32 | 556 | 1.86E-37 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 57 | 582 | 3.0E-174 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 16 | 56 | 1.1E-18 | - |
| SMART | SM00367 | LRR_CC_2 | 115 | 139 | 26.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 140 | 165 | 280.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 382 | 406 | 32.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 20 | 61 | 5.5E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 491 | 515 | 17.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 324 | 347 | 210.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 442 | 465 | 21.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_031276752.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Pistacia vera] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0H3YCH4 | Transport inhibitor response 1-like protein OS=Dimocarpus longan OX=128017 GN=TIR1-1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology