Basic Information
Locus ID:
pistato.v30092450
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 21296283 | 21306046 | + | pistato.v30092450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 112,387.54 Da | 37.66 | 72.28 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 8 | 260 | 1.97288E-66 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 51 | 86 | 0.035 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 857 | 1015 | 1.2E-50 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 170 | 3.3E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 174 | 212 | 6.8E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 7 | 43 | 0.028 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 228 | 252 | 0.18 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 92 | 128 | 4.2E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 293 | 4.45E-69 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 197 | 3.1E-58 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 198 | 296 | 6.6E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 215 | 253 | 0.25 | IPR001680 |
| SMART | SM00320 | WD40_4 | 47 | 86 | 4.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 44 | 0.0035 | IPR001680 |
| SMART | SM00320 | WD40_4 | 173 | 212 | 5.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 131 | 170 | 1.3E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 128 | 1.7E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 54 | 95 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 180 | 215 | 12.024679 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 180 | 221 | 15.120162 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 179 | 17.359182 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 96 | 130 | 12.235586 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 175 | 13.421944 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 54 | 95 | 9.99469 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 96 | 137 | 15.554599 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 53 | 10.174269 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 199 | 213 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 157 | 171 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 157 | 171 | 3.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 199 | 213 | 3.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 115 | 129 | 3.1E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 1018 | 19.649719 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 481 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 766 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 691 | 760 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 678 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_031248254.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Pistacia vera] | 0 |
| F4HTH8 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 OS=Arabidopsis thaliana OX=3702 GN=KTN80.2 PE=1 SV=1 | 0 | |
| TrEMBL | V4U941 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Citrus clementina OX=85681 GN=CICLE_v10014112mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology