Basic Information
Locus ID:
pistato.v30092390
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 21097786 | 21107968 | + | pistato.v30092390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 160,691.47 Da | 46.61 | 77.35 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1289 | 1411 | 8.13257E-53 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 684 | 1027 | 6.0794E-82 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1301 | 1401 | 9.1E-16 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 700 | 1104 | 6.7E-68 | IPR000330 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 1143 | 1180 | 4.1E-5 | IPR018957 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1035 | 1457 | 3.77E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 670 | 1027 | 1.17E-43 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1140 | 1186 | 1.98E-11 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 916 | 1039 | 2.5E-29 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 666 | 740 | 3.6E-8 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 785 | 884 | 4.6E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 1191 | 1458 | 1.5E-56 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1136 | 1190 | 5.9E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 1143 | 1181 | 4.9E-5 | IPR001841 |
| SMART | SM00490 | helicmild6 | 1318 | 1401 | 2.0E-17 | IPR001650 |
| SMART | SM00487 | ultradead3 | 676 | 1006 | 1.6E-29 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 807 | 989 | 11.521355 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1295 | 1454 | 16.100796 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1143 | 1182 | 10.512376 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1158 | 1167 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 743 | 774 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 758 | 774 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 62 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_031262898.1 | helicase-like transcription factor CHR28 [Pistacia vera] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067GKI0 | Helicase-like transcription factor CHR28 OS=Citrus sinensis OX=2711 GN=CISIN_1g000537mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology