Basic Information
Locus ID:
pistato.v30090650
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Exosome complex component
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 16178498 | 16180097 | + | pistato.v30090650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 45,113.68 Da | 35.26 | 77.61 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00028 | B_lectin | 26 | 163 | 7.2825E-25 | IPR001480 |
| Pfam | PF00954 | S-locus glycoprotein domain | 221 | 321 | 3.2E-8 | IPR000858 |
| Pfam | PF08276 | PAN-like domain | 321 | 380 | 5.1E-8 | IPR003609 |
| Pfam | PF01453 | D-mannose binding lectin | 82 | 188 | 8.3E-29 | IPR001480 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 81 | 191 | 1.7E-20 | IPR036426 |
| Gene3D | G3DSA:2.90.10.10 | - | 20 | 160 | 1.7E-12 | IPR036426 |
| SMART | SM00108 | blect_4 | 26 | 163 | 1.6E-25 | IPR001480 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 26 | 156 | 13.195135 | IPR001480 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18470.1 | Curculin-like (mannose-binding) lectin family protein. | 0 |
| RefSeq | XP_031287047.1 | G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Pistacia vera] | 0 |
| Q9LW83 | G-type lectin S-receptor-like serine/threonine-protein kinase CES101 OS=Arabidopsis thaliana OX=3702 GN=CES101 PE=2 SV=2 | 0 | |
| TrEMBL | A0A067EMP5 | Bulb-type lectin domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g014851mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg18161, jg18162, jg18163, jg18164, jg18165, jg23599 |
| Anacardiaceae | Pistacia vera | 10 | pistato.v30014320, pistato.v30036750, pistato.v30036760 ... |
| Apiaceae | Apium graveolens | 1 | AgUnG01050 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G18470.1 |
| Brassicaceae | Brassica nigra | 3 | BniB05g045300.2N, BniB08g009250.2N, BniB08g009270.2N |
| Plantaginaceae | Plantago ovata | 4 | Pov_00016931, Pov_00029256, Pov_00029257, Pov_00041214 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.1374, evm.TU.LG02.1375, evm.TU.LG09.595 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.347, evm.TU.Scaffold_8_RagTag.280 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3277 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3165 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13833 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21937 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16308 |
| Salicaceae | Populus euphratica | 5 | populus_peu00251, populus_peu00252, populus_peu00253 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132635386, gene-LOC132637212 |