Basic Information
Locus ID:
pistato.v30088390
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Casein Kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 11290068 | 11301259 | - | pistato.v30088390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 162,098.33 Da | 43.86 | 92.66 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 900 | 959 | 1.1E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 1279 | 1333 | 2.2E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 672 | 715 | 8.5E-7 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 754 | 815 | 9.7E-9 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 1208 | 1230 | 0.055 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 143 | 411 | 1.15E-42 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 973 | 1376 | 3.17E-49 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 701 | 1014 | 5.55E-51 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 115 | 448 | 2.5E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1139 | 1245 | 9.5E-25 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1271 | 1386 | 1.8E-40 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 664 | 964 | 6.3E-71 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 965 | 1138 | 3.2E-43 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 946 | 967 | 670.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1158 | 1187 | 110.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1206 | 1232 | 290.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 778 | 810 | 110.0 | - |
| SMART | SM00369 | LRR_typ_2 | 1182 | 1205 | 45.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1344 | 1367 | 86.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 1320 | 1349 | 53.0 | - |
| SMART | SM00369 | LRR_typ_2 | 1320 | 1343 | 12.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 874 | 898 | 24.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1206 | 1230 | 10.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 922 | 946 | 26.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 826 | 850 | 74.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1158 | 1181 | 120.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 143 | 402 | 1.1E-6 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 778 | 802 | 51.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1296 | 1319 | 280.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1015 | 1041 | 220.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1208 | 1231 | 7.234511 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1160 | 1182 | 7.180607 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 40 | 406 | 13.276787 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1346 | 1368 | 7.134402 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 226 | 238 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 149 | 180 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 1209 | 1222 | 3.6E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 1320 | 1333 | 3.6E-6 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 54 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03940.1 | Protein kinase family protein. | 0 |
| RefSeq | XP_031264771.1 | casein kinase 1-like protein HD16 [Pistacia vera] | 0 |
| Q852L0 | Casein kinase 1-like protein HD16 OS=Oryza sativa subsp. japonica OX=39947 GN=HD16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067EUZ8 | Protein kinase domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g005214mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18890 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021381 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056200 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032386 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0017740 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30085600, pistato.v30085610, pistato.v30085720 ... |
| Apiaceae | Apium graveolens | 5 | Ag1G01409, Ag1G01533, Ag1G01534, Ag3G00393, Ag9G01364 |
| Arecaceae | Cocos nucifera | 1 | scaffold001583G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718375 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G03062, Ftri16G18592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G04220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027707m.g.v1.0, Thhalv10027711m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02900.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g018820.2N, BniB04g018840.2N, BniB07g033940.2N |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2115, evm.TU.LG15.1016 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.19 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10341 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20621 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17663 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002965 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24363 |
| Salicaceae | Populus euphratica | 1 | populus_peu04482 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607114 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8519 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1643 |