Basic Information
Locus ID:
pistato.v30085720
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 6799098 | 6801518 | + | pistato.v30085720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 88,974.31 Da | 42.11 | 106.80 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 249 | 307 | 1.0E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 648 | 707 | 1.1E-9 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 18 | 64 | 1.7E-9 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 558 | 577 | 1.3 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 373 | 709 | 2.28E-52 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 15 | 309 | 2.21E-51 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 90 | 295 | 3.4E-59 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 464 | 747 | 6.6E-81 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 296 | 463 | 2.5E-34 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 13 | 89 | 7.8E-9 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 199 | 222 | 410.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 271 | 295 | 26.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 556 | 579 | 16.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 508 | 532 | 56.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 223 | 247 | 24.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 670 | 694 | 5.4 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 247 | 273 | 440.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 556 | 577 | 600.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 508 | 523 | 160.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 670 | 696 | 36.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 223 | 244 | 140.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 102 | 129 | 340.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 151 | 166 | 170.0 | - |
| SMART | SM00369 | LRR_typ_2 | 151 | 175 | 52.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 672 | 695 | 7.43473 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 670 | 683 | 4.5E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 154 | 167 | 4.5E-6 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04220.1 | receptor like protein 46. | 0 |
| RefSeq | XP_031269582.1 | receptor-like protein 46 [Pistacia vera] | 0 |
| F4JGB6 | Receptor-like protein 46 OS=Arabidopsis thaliana OX=3702 GN=RLP46 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5C7IL74 | LRRNT_2 domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_004307 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18890 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021381 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056200 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032386 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0017740 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30085600, pistato.v30085610, pistato.v30085720 ... |
| Apiaceae | Apium graveolens | 5 | Ag1G01409, Ag1G01533, Ag1G01534, Ag3G00393, Ag9G01364 |
| Arecaceae | Cocos nucifera | 1 | scaffold001583G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718375 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G03062, Ftri16G18592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G04220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027707m.g.v1.0, Thhalv10027711m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02900.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g018820.2N, BniB04g018840.2N, BniB07g033940.2N |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2115, evm.TU.LG15.1016 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.19 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10341 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20621 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17663 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002965 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24363 |
| Salicaceae | Populus euphratica | 1 | populus_peu04482 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607114 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8519 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1643 |