Basic Information
Locus ID:
pistato.v30084090
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
zinc finger (Ran-binding) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 4047489 | 4051450 | - | pistato.v30084090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.97 | 91,942.24 Da | 60.19 | 45.96 | -1.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 271 | 299 | 9.1E-9 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 305 | 332 | 1.5E-4 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 264 | 300 | 2.08E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 263 | 301 | 1.1E-16 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 302 | 333 | 6.2E-8 | - |
| SMART | SM00547 | zf_4 | 273 | 297 | 1.6E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 306 | 330 | 0.06 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 271 | 300 | 10.048569 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 304 | 333 | 9.325869 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 275 | 294 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 308 | 327 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 711 | 734 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 781 | 804 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 804 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 577 | 599 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 680 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 746 | 769 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 605 | 661 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 439 | - | - |
| Coils | Coil | Coil | 74 | 94 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_031260674.1 | uncharacterized protein LOC116118851 [Pistacia vera] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2H5Q665 | Zinc finger protein VAR3, chloroplastic OS=Citrus unshiu OX=55188 GN=CUMW_199640 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology