Basic Information
Locus ID:
pistato.v30083820
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
WD repeat domain phosphoinositide-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 3830578 | 3832552 | + | pistato.v30083820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 42,206.76 Da | 31.12 | 87.13 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 245 | 275 | 0.01 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 35 | 283 | 5.83E-28 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 15 | 302 | 1.5E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 192 | 232 | 0.27 | IPR001680 |
| SMART | SM00320 | WD40_4 | 235 | 276 | 0.17 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_031253848.1 | autophagy-related protein 18a-like [Pistacia vera] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | V4TAP3 | WD repeat domain phosphoinositide-interacting protein 3 OS=Citrus clementina OX=85681 GN=CICLE_v10001616mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology