Basic Information
Locus ID:
pistato.v30082330
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 2196225 | 2200335 | + | pistato.v30082330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 65,311.70 Da | 42.37 | 83.66 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 210 | 407 | 1.57079E-96 | - |
| CDD | cd18794 | SF2_C_RecQ | 408 | 541 | 1.33224E-65 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 423 | 531 | 2.2E-15 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 547 | 581 | 3.2E-7 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 218 | 386 | 5.2E-16 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 255 | 550 | 2.81E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 408 | 584 | 7.4E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 173 | 407 | 5.1E-83 | IPR027417 |
| SMART | SM00490 | helicmild6 | 450 | 532 | 3.2E-22 | IPR001650 |
| SMART | SM00487 | ultradead3 | 212 | 416 | 1.8E-26 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 210 | 548 | 9.8E-140 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 224 | 400 | 20.883293 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 422 | 573 | 18.381359 | IPR001650 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 339 | 348 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 133 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_031269491.1 | ATP-dependent DNA helicase Q-like 1 [Pistacia vera] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | V4V4B8 | ATP-dependent DNA helicase OS=Citrus clementina OX=85681 GN=CICLE_v10000586mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology