Basic Information
Locus ID:
pistato.v30082220
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 2134721 | 2138802 | - | pistato.v30082220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.42 | 72,205.86 Da | 41.06 | 84.19 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 210 | 435 | 1.6612E-93 | - |
| CDD | cd18794 | SF2_C_RecQ | 436 | 569 | 7.14246E-65 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 451 | 559 | 3.7E-15 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 572 | 641 | 5.2E-13 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 218 | 414 | 3.8E-15 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 283 | 580 | 4.79E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 436 | 644 | 7.0E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 172 | 435 | 8.0E-78 | IPR027417 |
| SMART | SM00487 | ultradead3 | 212 | 444 | 2.3E-21 | IPR014001 |
| SMART | SM00490 | helicmild6 | 478 | 560 | 3.2E-22 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 276 | 643 | 1.8E-133 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 453 | 608 | 18.510826 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 224 | 428 | 19.072521 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 367 | 376 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 153 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_031269491.1 | ATP-dependent DNA helicase Q-like 1 [Pistacia vera] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | V4V4B8 | ATP-dependent DNA helicase OS=Citrus clementina OX=85681 GN=CICLE_v10000586mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology