Basic Information
Locus ID:
pistato.v30081870
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 1718075 | 1722442 | + | pistato.v30081870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 69,070.65 Da | 39.64 | 111.68 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 11 | 48 | 1.7E-5 | IPR001810 |
| Pfam | PF00646 | F-box domain | 101 | 135 | 6.3E-6 | IPR001810 |
| SUPERFAMILY | SSF52058 | L domain-like | 171 | 474 | 1.7E-14 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 51 | 1.7E-11 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 98 | 141 | 3.79E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 89 | 137 | 5.4E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 163 | 396 | 9.3E-12 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 9 | 51 | 7.6E-6 | - |
| SMART | SM00256 | fbox_2 | 104 | 144 | 0.0035 | IPR001810 |
| SMART | SM00256 | fbox_2 | 14 | 54 | 0.01 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 8 | 43 | 8.729132 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02910.2 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_031269426.1 | putative F-box/LRR-repeat protein At3g18150 [Pistacia vera] | 0 |
| Q9LYZ4 | F-box/LRR-repeat protein At5g02910 OS=Arabidopsis thaliana OX=3702 GN=At5g02910 PE=2 SV=1 | 0 | |
| TrEMBL | V4T217 | F-box domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10000694mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology