Basic Information
Locus ID:
pistato.v30081820
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 1663299 | 1671591 | + | pistato.v30081820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 130,921.60 Da | 39.99 | 84.24 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 967 | 1000 | 0.0011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 471 | 504 | 6.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 330 | 1005 | 4.87E-38 | IPR011047 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 966 | 1160 | 1.41E-11 | IPR011044 |
| Gene3D | G3DSA:2.130.10.10 | - | 796 | 1019 | 1.5E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 439 | 719 | 3.0E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 319 | 423 | 2.4E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1021 | 1158 | 8.2E-6 | IPR015943 |
| SMART | SM00667 | Lish | 4 | 36 | 1.8E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 506 | 573 | 10.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 622 | 662 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1056 | 1092 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 918 | 958 | 1.5 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 2.7E-12 | IPR006595 |
| SMART | SM00320 | WD40_4 | 463 | 504 | 2.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 879 | 915 | 470.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 576 | 619 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 335 | 374 | 0.085 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1110 | 1147 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 961 | 1000 | 6.5E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 968 | 1003 | 10.732868 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.007684 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 470 | 505 | 9.205141 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 341 | 383 | 8.536777 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 640 | 671 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 12.803558 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 968 | 1009 | 13.415834 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 491 | 505 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1149 | 1186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1165 | 1186 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.2 | TOPLESS-related 3. | 0 |
| RefSeq | XP_031269555.1 | topless-related protein 3 isoform X1 [Pistacia vera] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067H246 | Topless-related protein 3-like OS=Citrus sinensis OX=2711 GN=CISIN_1g001190mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology