Basic Information
Locus ID:
pistato.v30079570
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 37013292 | 37017760 | - | pistato.v30079570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 41,263.46 Da | 53.30 | 79.35 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 71 | 107 | 7.4E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 69 | 107 | 1.83E-6 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 71 | 111 | 3.1E-8 | - |
| SMART | SM00256 | fbox_2 | 75 | 116 | 1.1E-4 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 283 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 254 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_031254349.1 | F-box protein SKIP23-like [Pistacia vera] | 0 |
| TrEMBL | A0A5C7GUX9 | CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_027551 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg36236 |
| Anacardiaceae | Pistacia vera | 11 | pistato.v30071390, pistato.v30079570, pistato.v30079870 ... |