Basic Information
Locus ID:
pistato.v30074910
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 19238351 | 19250077 | - | pistato.v30074910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 111,329.37 Da | 48.35 | 85.77 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 813 | 966 | 8.54197E-59 | - |
| Pfam | PF06337 | DUSP domain | 39 | 146 | 3.5E-13 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 364 | 965 | 6.1E-87 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 362 | 968 | 1.04E-108 | IPR038765 |
| SUPERFAMILY | SSF143791 | DUSP-like | 16 | 145 | 5.89E-12 | IPR035927 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 352 | 604 | 1.2E-66 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 200 | 282 | 1.5E-10 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 769 | 976 | 3.8E-57 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 6 | 148 | 9.1E-16 | - |
| SMART | SM00695 | dusp | 34 | 160 | 6.7E-12 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 364 | 968 | 56.640312 | IPR028889 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 32 | 159 | 11.207162 | IPR006615 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 365 | 380 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 910 | 927 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_031285059.1 | ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Pistacia vera] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5C7IP72 | Ubiquitin carboxyl-terminal hydrolase OS=Acer yangbiense OX=1000413 GN=EZV62_005187 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology