Basic Information
Locus ID:
pistato.v30073460
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 14697587 | 14706521 | - | pistato.v30073460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 106,825.20 Da | 55.75 | 80.13 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 248 | 356 | 1.9E-6 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 838 | 901 | 4.2E-5 | IPR014720 |
| SUPERFAMILY | SSF56784 | HAD-like | 131 | 383 | 1.48E-18 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 832 | 911 | 1.08E-12 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 701 | 765 | 9.76E-10 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 699 | 780 | 1.3E-5 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 128 | 389 | 2.4E-25 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 835 | 910 | 8.0E-10 | - |
| SMART | SM00358 | DRBM_3 | 701 | 765 | 8.1E-6 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 837 | 905 | 2.9E-7 | IPR014720 |
| SMART | SM00577 | forpap2 | 191 | 367 | 9.8E-18 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 836 | 906 | 11.77117 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 132 | 380 | 15.569001 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 700 | 766 | 10.872946 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 535 | 556 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 907 | 955 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 519 | 608 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_031250793.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X2 [Pistacia vera] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067GKB1 | protein-serine/threonine phosphatase OS=Citrus sinensis OX=2711 GN=CISIN_1g002166mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology