Basic Information
Locus ID:
pistato.v30072070
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 9788411 | 9792063 | - | pistato.v30072070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.84 | 38,162.67 Da | 34.86 | 73.07 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 222 | 284 | 9.75911E-10 | - |
| Pfam | PF12906 | RING-variant domain | 222 | 283 | 2.1E-6 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 217 | 287 | 1.06E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 205 | 293 | 9.1E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 221 | 284 | 6.0E-11 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 214 | 290 | 17.268059 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G34200.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_031253654.1 | uncharacterized protein LOC116111636 isoform X1 [Pistacia vera] | 0 |
| TrEMBL | A0A067GE50 | RING-CH-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g017863mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology