Basic Information
Locus ID:
pistato.v30067940
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 2819021 | 2819749 | - | pistato.v30067940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 26,471.51 Da | 45.92 | 69.79 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 194 | 231 | 5.08142E-9 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 191 | 236 | 9.3E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 189 | 238 | 1.15E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 241 | 4.2E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 194 | 231 | 3.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 194 | 232 | 10.984472 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 105 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03965.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_031273019.1 | uncharacterized protein LOC116131516 [Pistacia vera] | 0 |
| TrEMBL | V4W9T1 | RING-type domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10017636mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology