Basic Information
Locus ID:
pistato.v30067450
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
LRR receptor-like serine threonine-protein kinase RFK1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 2393642 | 2402409 | + | pistato.v30067450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 111,589.46 Da | 38.28 | 99.28 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11721 | Malectin domain | 458 | 629 | 4.1E-22 | IPR021720 |
| Pfam | PF00069 | Protein kinase domain | 712 | 975 | 5.2E-45 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 340 | 398 | 2.2E-6 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 120 | 134 | 1.7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 145 | 198 | 1.6E-7 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 693 | 979 | 1.8E-70 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 83 | 425 | 1.22E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 271 | 448 | 6.9E-29 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 53 | 201 | 1.3E-31 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 688 | 781 | 8.7E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 782 | 994 | 3.4E-52 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 202 | 268 | 1.3E-17 | IPR032675 |
| Gene3D | G3DSA:2.60.120.430 | - | 458 | 644 | 1.8E-20 | - |
| SMART | SM00369 | LRR_typ_2 | 143 | 166 | 42.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 119 | 142 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 215 | 238 | 88.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 119 | 134 | 180.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 239 | 268 | 85.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 167 | 193 | 130.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 362 | 388 | 36.0 | - |
| SMART | SM00369 | LRR_typ_2 | 167 | 190 | 12.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 143 | 166 | 2.7 | - |
| SMART | SM00369 | LRR_typ_2 | 239 | 263 | 68.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 145 | 168 | 7.188307 | IPR001611 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 25 | 5.0 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 709 | 984 | 38.534245 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 169 | 192 | 7.018892 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 715 | 737 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53440.1 | Leucine-rich repeat transmembrane protein kinase. | 0 |
| RefSeq | XP_031262586.1 | probable LRR receptor-like serine/threonine-protein kinase At1g07650 [Pistacia vera] | 0 |
| C0LGG9 | Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana OX=3702 GN=At1g53440 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3N7G1Q4 | Protein kinase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G011200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 8 | pistato.v30065220, pistato.v30065230, pistato.v30067340 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.1224 |