Basic Information
Locus ID:
pistato.v30065230
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
LRR receptor-like serine threonine-protein kinase RFK1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 53219868 | 53228742 | + | pistato.v30065230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.19 | 95,973.96 Da | 38.34 | 97.28 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 144 | 204 | 1.0E-9 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 566 | 834 | 2.3E-46 | IPR000719 |
| Pfam | PF11721 | Malectin domain | 320 | 494 | 1.1E-25 | IPR021720 |
| SUPERFAMILY | SSF52058 | L domain-like | 79 | 273 | 4.49E-36 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 550 | 839 | 8.03E-71 | IPR011009 |
| Gene3D | G3DSA:2.60.120.430 | - | 320 | 501 | 3.4E-26 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 53 | 232 | 3.4E-36 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 236 | 289 | 3.4E-5 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 539 | 640 | 7.7E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 641 | 853 | 6.9E-53 | - |
| SMART | SM00365 | LRR_sd22_2 | 143 | 166 | 12.0 | - |
| SMART | SM00220 | serkin_6 | 565 | 837 | 8.0E-27 | IPR000719 |
| SMART | SM00365 | LRR_sd22_2 | 119 | 142 | 240.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 167 | 193 | 25.0 | - |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 169 | 192 | 7.480934 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 565 | 843 | 38.322235 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 571 | 593 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53440.1 | Leucine-rich repeat transmembrane protein kinase. | 0 |
| RefSeq | XP_031277872.1 | probable LRR receptor-like serine/threonine-protein kinase At1g07650 [Pistacia vera] | 0 |
| C0LGG9 | Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana OX=3702 GN=At1g53440 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3N7FMF6 | Protein kinase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G155600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 8 | pistato.v30065220, pistato.v30065230, pistato.v30067340 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.1224 |