Basic Information
Locus ID:
pistato.v30062090
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 33090888 | 33092916 | + | pistato.v30062090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 18,737.91 Da | 36.86 | 82.31 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 54 | 106 | 2.33292E-11 | - |
| Pfam | PF12906 | RING-variant domain | 54 | 105 | 6.6E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 48 | 108 | 1.73E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 42 | 115 | 4.7E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 53 | 106 | 4.5E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 46 | 112 | 19.031952 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_031286404.1 | E3 ubiquitin-protein ligase MARCH2-like [Pistacia vera] | 0 |
| TrEMBL | V4SME3 | RING-CH-type domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10029385mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology