Basic Information
Locus ID:
pistato.v30060620
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 31565971 | 31572059 | + | pistato.v30060620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 57,919.97 Da | 41.94 | 105.44 | 0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00083 | Sugar (and other) transporter | 72 | 254 | 4.1E-34 | IPR005828 |
| Pfam | PF07690 | Major Facilitator Superfamily | 378 | 518 | 2.0E-9 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 29 | 517 | 1.44E-70 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 40 | 521 | 2.6E-86 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 46 | 513 | 40.04689 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 389 | 404 | - | IPR005829 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_031253469.1 | organic cation/carnitine transporter 7-like [Pistacia vera] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2H5Q0T4 | MFS domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_185090 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology