Basic Information
Locus ID:
pistato.v30060590
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 31544385 | 31549732 | + | pistato.v30060590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.85 | 59,363.45 Da | 43.34 | 106.51 | 0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00083 | Sugar (and other) transporter | 78 | 265 | 3.0E-33 | IPR005828 |
| Pfam | PF07690 | Major Facilitator Superfamily | 391 | 531 | 1.6E-8 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 42 | 529 | 6.67E-68 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 53 | 534 | 7.8E-83 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 59 | 526 | 38.68573 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 402 | 417 | - | IPR005829 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 315 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_031253469.1 | organic cation/carnitine transporter 7-like [Pistacia vera] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067FV35 | MFS domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g010268mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology