Basic Information
Locus ID:
pistato.v30060070
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 31114462 | 31120423 | - | pistato.v30060070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 72,016.38 Da | 43.47 | 93.92 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 262 | 304 | 5.46705E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 385 | 424 | 4.4E-10 | IPR000225 |
| Pfam | PF05536 | Neurochondrin | 520 | 644 | 6.1E-6 | IPR008709 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 468 | 506 | 9.6E-8 | IPR000225 |
| Pfam | PF04564 | U-box domain | 258 | 328 | 2.6E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 249 | 334 | 5.55E-32 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 356 | 637 | 1.19E-52 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 342 | 664 | 1.2E-59 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 4 | 119 | 3.7E-13 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 256 | 331 | 5.0E-32 | IPR013083 |
| SMART | SM00185 | arm_5 | 549 | 589 | 40.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 591 | 631 | 14.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 385 | 425 | 1.4E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 467 | 507 | 0.24 | IPR000225 |
| SMART | SM00185 | arm_5 | 508 | 548 | 40.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 426 | 466 | 0.19 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 261 | 324 | 3.0E-36 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 396 | 438 | 12.8624 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 519 | 561 | 8.5224 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 257 | 331 | 46.070171 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 635 | 665 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_031287512.1 | U-box domain-containing protein 13-like [Pistacia vera] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067FZR7 | RING-type E3 ubiquitin transferase OS=Citrus sinensis OX=2711 GN=CISIN_1g006099mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology