Basic Information
Locus ID:
pistato.v30058850
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 29740319 | 29745950 | + | pistato.v30058850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 67,501.41 Da | 47.58 | 81.92 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 214 | 348 | 8.2E-18 | IPR000782 |
| Pfam | PF00011 | Hsp20/alpha crystallin family | 513 | 589 | 1.1E-8 | IPR002068 |
| SUPERFAMILY | SSF49764 | HSP20-like chaperones | 479 | 586 | 3.35E-19 | IPR008978 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 208 | 349 | 1.57E-24 | IPR036378 |
| Gene3D | G3DSA:2.60.40.790 | - | 467 | 590 | 1.4E-17 | IPR008978 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 193 | 348 | 1.4E-17 | IPR036378 |
| SMART | SM00554 | fasc_3 | 243 | 349 | 1.0E-17 | IPR000782 |
| ProSiteProfiles | PS01031 | Small heat shock protein (sHSP) domain profile. | 502 | 600 | 12.150294 | IPR002068 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 202 | 346 | 20.18342 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 389 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60490.1 | FASCICLIN-like arabinogalactan-protein 12. | 0 |
| RefSeq | XP_031285884.1 | fasciclin-like arabinogalactan protein 12 [Pistacia vera] | 0 |
| Q8LEE9 | Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana OX=3702 GN=FLA12 PE=2 SV=2 | 0 | |
| TrEMBL | A0A067G4C1 | FAS1 domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g037512mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology