Basic Information
Locus ID:
pistato.v30057920
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 28180957 | 28184012 | + | pistato.v30057920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 32,620.28 Da | 53.70 | 59.19 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 208 | 266 | 3.4E-26 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 25 | 106 | 2.6E-19 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 160 | 203 | 1.3E-6 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 159 | 209 | 1.66E-9 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 21 | 95 | 3.01E-17 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 97 | 154 | 3.66E-17 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 206 | 4.4E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 232 | 275 | 3.3E-19 | - |
| SMART | SM00184 | ring_2 | 161 | 203 | 2.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 161 | 204 | 11.707369 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 18 | 94 | 25.65399 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 96 | 160 | 33.269642 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_031261160.1 | E3 ubiquitin-protein ligase RZFP34 [Pistacia vera] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7IYT7 | RING-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_002351 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology