Basic Information
Locus ID:
pistato.v30057560
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 26810816 | 26817113 | - | pistato.v30057560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.73 | 97,553.42 Da | 57.66 | 67.82 | -0.91 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 807 | 846 | 5.71081E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 805 | 849 | 3.0E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 806 | 852 | 5.89E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 791 | 855 | 1.7E-11 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 807 | 846 | 10.659906 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 646 | 669 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 651 | 669 | - | - |
| Coils | Coil | Coil | 735 | 762 | - | - |
| Coils | Coil | Coil | 390 | 410 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27950.1 | Ring/U-Box superfamily protein. | 0 |
| RefSeq | XP_031265538.1 | uncharacterized protein LOC116123907 [Pistacia vera] | 0 |
| Q0MW30 | E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus OX=10090 GN=Neurl1b PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7IWT2 | RING-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_002336 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology