Basic Information
Locus ID:
pistato.v30057020
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 25796186 | 25802436 | - | pistato.v30057020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 49,811.67 Da | 29.25 | 81.33 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00850 | Histone deacetylase domain | 30 | 319 | 1.4E-83 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 7 | 376 | 6.71E-119 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 1 | 388 | 2.7E-137 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 1 | 434 | 4.9E-211 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 218 | 231 | 3.5E-56 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 117 | 137 | 3.5E-56 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 96 | 113 | 3.5E-56 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 65 | 83 | 3.5E-56 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 235 | 253 | 3.5E-56 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 257 | 267 | 3.7E-23 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 139 | 162 | 3.7E-23 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 158 | 174 | 3.5E-56 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 171 | 186 | 3.7E-23 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 32 | 49 | 3.5E-56 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 435 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 435 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44680.1 | histone deacetylase 9. Class I RPD3 type protein | 0 |
| RefSeq | XP_052288159.1 | histone deacetylase 9 isoform X1 [Citrus sinensis] | 0 |
| Q8H0W2 | Histone deacetylase 9 OS=Arabidopsis thaliana OX=3702 GN=HDA9 PE=1 SV=1 | 0 | |
| TrEMBL | V4SKE1 | Histone deacetylase OS=Citrus clementina OX=85681 GN=CICLE_v10029823mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology