Basic Information
Locus ID:
pistato.v30055480
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 18400721 | 18417675 | + | pistato.v30055480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 99,641.71 Da | 42.50 | 84.54 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 712 | 882 | 4.3642E-59 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 282 | 881 | 8.4E-83 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 280 | 884 | 7.85E-108 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 268 | 481 | 7.4E-66 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 9 | 117 | 1.4E-5 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 561 | 887 | 4.1E-56 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 282 | 884 | 56.354202 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 827 | 844 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 283 | 298 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 633 | 650 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 633 | 654 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_044506531.1 | ubiquitin carboxyl-terminal hydrolase 8 isoform X2 [Mangifera indica] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5C7IYH2 | Ubiquitin carboxyl-terminal hydrolase OS=Acer yangbiense OX=1000413 GN=EZV62_002085 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology