Basic Information
Locus ID:
pistato.v30054840
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 13049309 | 13056983 | + | pistato.v30054840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 41,633.88 Da | 38.47 | 85.56 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 59 | 292 | 1.4E-51 | IPR024729 |
| Gene3D | G3DSA:3.10.20.90 | - | 218 | 315 | 3.4E-23 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 99 | 216 | 1.9E-29 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.2 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_031278611.1 | ubiquitin carboxyl-terminal hydrolase 13-like [Pistacia vera] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J9IAC7 | ubiquitinyl hydrolase 1 (Fragment) OS=Gossypium harknessii OX=34285 GN=Gohar_022030 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 4 | pistato.v30052220, pistato.v30053190, pistato.v30054840 ... |
| Apiaceae | Apium graveolens | 1 | Ag1G00610 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G17586 |
| Poaceae | Oryza coarctata | 1 | Oco21G007500 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132640125, gene-LOC132640126, gene-LOC132640127 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI002249300 |
| Zosteraceae | Zostera marina | 1 | Zosma02g00200.v3.1 |