Basic Information
Locus ID:
pistato.v30054310
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 10605214 | 10609155 | + | pistato.v30054310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.39 | 35,077.76 Da | 44.05 | 68.38 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 58 | 96 | 3.75928E-15 | - |
| Pfam | PF03145 | Seven in absentia protein family | 102 | 300 | 1.4E-82 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 113 | 304 | 1.7E-46 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 53 | 101 | 3.28E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 113 | 168 | 4.7E-17 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 169 | 301 | 3.1E-38 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 33 | 112 | 6.7E-9 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 113 | 173 | 14.125784 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 60 | 96 | 9.774726 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_031268562.1 | E3 ubiquitin-protein ligase SINAT2-like [Pistacia vera] | 0 |
| Q9M2P4 | E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7IUW2 | RING-type E3 ubiquitin transferase OS=Acer yangbiense OX=1000413 GN=EZV62_001706 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology