Basic Information
Locus ID:
pistato.v30052300
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 5141105 | 5142663 | + | pistato.v30052300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.33 | 46,066.30 Da | 54.94 | 78.77 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 33 | 65 | 1.5E-6 | IPR001810 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 94 | 301 | 2.48E-6 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 29 | 69 | 1.44E-6 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 33 | 70 | 1.2E-6 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 31 | 78 | 9.470975 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64840.1 | Protein of unknown function (DUF295). | 0 |
| RefSeq | XP_031252089.1 | uncharacterized protein LOC116109985 [Pistacia vera] | 0 |
| Q9XIR1 | F-box/kelch-repeat protein At1g64840 OS=Arabidopsis thaliana OX=3702 GN=At1g64840 PE=2 SV=2 | 0 | |
| TrEMBL | A0A067FN41 | F-box domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g039734mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30052300 |
| Apiaceae | Apium graveolens | 4 | Ag11G04152, Ag11G04154, Ag1G00079, Ag9G02775 |
| Asteraceae | Flaveria trinervia | 3 | Ftri5G07866, Ftri5G20394, Ftri5G31736 |