Basic Information
Locus ID:
pistato.v30052220
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 4973679 | 4975183 | - | pistato.v30052220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 16,020.83 Da | 48.98 | 89.41 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 16 | 66 | 2.0E-7 | IPR024729 |
| Gene3D | G3DSA:3.10.20.90 | - | 37 | 100 | 2.5E-5 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.3 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_044483132.1 | ubiquitin C-terminal hydrolase 12-like isoform X3 [Mangifera indica] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A392MRZ4 | Ubiquitin carboxyl-terminal hydrolase 12-like (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0011250 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 4 | pistato.v30052220, pistato.v30053190, pistato.v30054840 ... |
| Apiaceae | Apium graveolens | 1 | Ag1G00610 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G17586 |
| Poaceae | Oryza coarctata | 1 | Oco21G007500 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132640125, gene-LOC132640126, gene-LOC132640127 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI002249300 |
| Zosteraceae | Zostera marina | 1 | Zosma02g00200.v3.1 |