Basic Information
Locus ID:
pistato.v30049320
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 31460154 | 31474067 | + | pistato.v30049320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 232,544.45 Da | 47.22 | 85.66 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 534 | 576 | 5.4986E-19 | - |
| CDD | cd02187 | beta_tubulin | 1769 | 2051 | 1.10532E-167 | - |
| Pfam | PF06113 | Brain and reproductive organ-expressed protein (BRE) | 1419 | 1719 | 1.8E-33 | IPR010358 |
| Pfam | PF04564 | U-box domain | 531 | 599 | 2.8E-14 | IPR003613 |
| Pfam | PF00091 | Tubulin/FtsZ family, GTPase domain | 1769 | 1972 | 8.2E-67 | IPR003008 |
| SUPERFAMILY | SSF55307 | Tubulin C-terminal domain-like | 1980 | 2054 | 3.66E-27 | IPR008280 |
| SUPERFAMILY | SSF52490 | Tubulin nucleotide-binding domain-like | 1769 | 1983 | 2.75E-89 | IPR036525 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1226 | 1421 | 3.97E-14 | IPR036322 |
| SUPERFAMILY | SSF48371 | ARM repeat | 811 | 1177 | 6.06E-11 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 529 | 601 | 7.07E-23 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 1196 | 1428 | 1.8E-10 | IPR015943 |
| Gene3D | G3DSA:3.40.50.1440 | Tubulin/FtsZ, GTPase domain | 1765 | 2027 | 6.7E-106 | IPR036525 |
| Gene3D | G3DSA:1.25.10.10 | - | 669 | 1119 | 3.3E-12 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 520 | 609 | 2.9E-24 | IPR013083 |
| SMART | SM00320 | WD40_4 | 1215 | 1253 | 2.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1380 | 1421 | 0.0074 | IPR001680 |
| SMART | SM00864 | Tubulin_4 | 1808 | 2007 | 8.0E-55 | IPR003008 |
| SMART | SM00320 | WD40_4 | 1341 | 1377 | 320.0 | IPR001680 |
| SMART | SM00504 | Ubox_2 | 533 | 597 | 3.8E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 529 | 604 | 38.462872 | IPR003613 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1389 | 1421 | 8.703868 | IPR001680 |
| ProSitePatterns | PS00227 | Tubulin subunits alpha, beta, and gamma signature. | 1901 | 1907 | - | IPR017975 |
| PRINTS | PR01163 | Beta-tubulin signature | 1849 | 1860 | 1.3E-34 | IPR002453 |
| PRINTS | PR01161 | Tubulin signature | 1893 | 1911 | 4.6E-85 | IPR000217 |
| PRINTS | PR01161 | Tubulin signature | 1937 | 1950 | 4.6E-85 | IPR000217 |
| PRINTS | PR01161 | Tubulin signature | 1867 | 1891 | 4.6E-85 | IPR000217 |
| PRINTS | PR01161 | Tubulin signature | 1951 | 1971 | 4.6E-85 | IPR000217 |
| PRINTS | PR01161 | Tubulin signature | 1769 | 1789 | 4.6E-85 | IPR000217 |
| PRINTS | PR01161 | Tubulin signature | 1854 | 1865 | 4.6E-85 | IPR000217 |
| PRINTS | PR01161 | Tubulin signature | 1912 | 1933 | 4.6E-85 | IPR000217 |
| PRINTS | PR01161 | Tubulin signature | 1812 | 1831 | 4.6E-85 | IPR000217 |
| PRINTS | PR01163 | Beta-tubulin signature | 1913 | 1925 | 1.3E-34 | IPR002453 |
| PRINTS | PR01163 | Beta-tubulin signature | 1973 | 1985 | 1.3E-34 | IPR002453 |
| PRINTS | PR01163 | Beta-tubulin signature | 1869 | 1887 | 1.3E-34 | IPR002453 |
| PRINTS | PR01163 | Beta-tubulin signature | 1802 | 1819 | 1.3E-34 | IPR002453 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 409 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 329 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2052 | 2071 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 409 | - | - |
| Coils | Coil | Coil | 2033 | 2060 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75780.1 | tubulin beta-1 chain. beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responses | 0 |
| RefSeq | XP_031283198.1 | putative E3 ubiquitin-protein ligase LIN-1 [Pistacia vera] | 0 |
| C6L7U1 | Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus OX=34305 GN=CERBERUS PE=2 SV=2 | 0 | |
| TrEMBL | A0A6A6NHU6 | BRISC and BRCA1-A complex member 2 OS=Hevea brasiliensis OX=3981 GN=GH714_016321 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg11768, jg11769, jg11770, jg11771, jg31633, jg31634 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30049320, pistato.v30256780 |
| Apiaceae | Apium graveolens | 3 | Ag2G02459, Ag3G02527, Ag8G00225 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G011900, COCNU_07G002000 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702597, gene-LOC103706139 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.1751.V1.1, AsparagusV1_03.2268.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri4G07535, Ftri7G18227, Ftri8G01620 |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0877, Ceq06G1516 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0956, Cgl06G1574 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-141, nbisL1-mrna-8648 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.710, evm.TU.LG07.1111 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003863, Pov_00020671 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.91, BH01.509, BH02.80, CH02.102 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0000840, gene-QOZ80_1BG0049330 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0248980.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_051444, gene-QYE76_051560, gene-QYE76_051566 |
| Poaceae | Oryza coarctata | 2 | Oco01G005770, Oco02G005870 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g12930.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G006500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0204871 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr21G016220 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G274000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG020830, gene_TRIDC3BG031130 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G154900.1, TraesCS3B02G181200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb119290_P001 |
| Poaceae | Zoysia japonica | 5 | nbis-gene-24273, nbis-gene-24274, nbis-gene-32721 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g7183, Zma_g9505 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_10_RagTag.437, evm.TU.Scaffold_4_RagTag.1931 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-13099, nbisL1-mrna-16388, nbisL1-mrna-25645 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12295, nbisL1-mrna-6585 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-13044, nbisL1-mrna-13045, nbisL1-mrna-16830 ... |
| Rhizophoraceae | Kandelia candel | 4 | add.evm.TU.utg000018l.158, add.evm.TU.utg000033l.95 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000143, Maker00011993, Maker00014879 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-20232, nbisL1-mrna-23194 |
| Salicaceae | Populus euphratica | 5 | populus_peu15357, populus_peu21947, populus_peu33000 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603413, gene-LOC132622109 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107017250, gene-LOC107025502, gene-LOC114077896 |