HalophFGD

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Basic Information
Locus ID: pistato.v30049320
Species & Taxonomic ID: Pistacia vera & 55513
Genome Assembly: GWHBKLD00000000
Description: RING-type E3 ubiquitin transferase
Maps and Mapping Data
Chromosome Start End Strand ID
chr10 31460154 31474067 + pistato.v30049320
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.30 232,544.45 Da 47.22 85.66 -0.26
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd16664 RING-Ubox_PUB 534 576 5.4986E-19 -
CDD cd02187 beta_tubulin 1769 2051 1.10532E-167 -
Pfam PF06113 Brain and reproductive organ-expressed protein (BRE) 1419 1719 1.8E-33 IPR010358
Pfam PF04564 U-box domain 531 599 2.8E-14 IPR003613
Pfam PF00091 Tubulin/FtsZ family, GTPase domain 1769 1972 8.2E-67 IPR003008
SUPERFAMILY SSF55307 Tubulin C-terminal domain-like 1980 2054 3.66E-27 IPR008280
SUPERFAMILY SSF52490 Tubulin nucleotide-binding domain-like 1769 1983 2.75E-89 IPR036525
SUPERFAMILY SSF50978 WD40 repeat-like 1226 1421 3.97E-14 IPR036322
SUPERFAMILY SSF48371 ARM repeat 811 1177 6.06E-11 IPR016024
SUPERFAMILY SSF57850 RING/U-box 529 601 7.07E-23 -
Gene3D G3DSA:2.130.10.10 - 1196 1428 1.8E-10 IPR015943
Gene3D G3DSA:3.40.50.1440 Tubulin/FtsZ, GTPase domain 1765 2027 6.7E-106 IPR036525
Gene3D G3DSA:1.25.10.10 - 669 1119 3.3E-12 IPR011989
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger) 520 609 2.9E-24 IPR013083
SMART SM00320 WD40_4 1215 1253 2.8 IPR001680
SMART SM00320 WD40_4 1380 1421 0.0074 IPR001680
SMART SM00864 Tubulin_4 1808 2007 8.0E-55 IPR003008
SMART SM00320 WD40_4 1341 1377 320.0 IPR001680
SMART SM00504 Ubox_2 533 597 3.8E-27 IPR003613
ProSiteProfiles PS51698 U-box domain profile. 529 604 38.462872 IPR003613
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 1389 1421 8.703868 IPR001680
ProSitePatterns PS00227 Tubulin subunits alpha, beta, and gamma signature. 1901 1907 - IPR017975
PRINTS PR01163 Beta-tubulin signature 1849 1860 1.3E-34 IPR002453
PRINTS PR01161 Tubulin signature 1893 1911 4.6E-85 IPR000217
PRINTS PR01161 Tubulin signature 1937 1950 4.6E-85 IPR000217
PRINTS PR01161 Tubulin signature 1867 1891 4.6E-85 IPR000217
PRINTS PR01161 Tubulin signature 1951 1971 4.6E-85 IPR000217
PRINTS PR01161 Tubulin signature 1769 1789 4.6E-85 IPR000217
PRINTS PR01161 Tubulin signature 1854 1865 4.6E-85 IPR000217
PRINTS PR01161 Tubulin signature 1912 1933 4.6E-85 IPR000217
PRINTS PR01161 Tubulin signature 1812 1831 4.6E-85 IPR000217
PRINTS PR01163 Beta-tubulin signature 1913 1925 1.3E-34 IPR002453
PRINTS PR01163 Beta-tubulin signature 1973 1985 1.3E-34 IPR002453
PRINTS PR01163 Beta-tubulin signature 1869 1887 1.3E-34 IPR002453
PRINTS PR01163 Beta-tubulin signature 1802 1819 1.3E-34 IPR002453
MobiDBLite mobidb-lite consensus disorder prediction 378 409 - -
MobiDBLite mobidb-lite consensus disorder prediction 310 329 - -
MobiDBLite mobidb-lite consensus disorder prediction 302 337 - -
MobiDBLite mobidb-lite consensus disorder prediction 2052 2071 - -
MobiDBLite mobidb-lite consensus disorder prediction 393 409 - -
Coils Coil Coil 2033 2060 - -
Gene Ontology
Biological Process:
GO:0007017 (microtubule-based process) GO:0016567 (protein ubiquitination)
Molecular Function:
GO:0003924 (GTPase activity) GO:0004842 (ubiquitin-protein transferase activity) GO:0005200 (structural constituent of cytoskeleton) GO:0005515 (protein binding) GO:0005525 (GTP binding)
Cellular Component:
GO:0005874 (microtubule) GO:0070531 (BRCA1-A complex) GO:0070552 (BRISC complex)
Best hit
Source Best Hit ID Description E-value
TAIR AT1G75780.1 tubulin beta-1 chain. beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responses 0
RefSeq XP_031283198.1 putative E3 ubiquitin-protein ligase LIN-1 [Pistacia vera] 0
Swiss-Prot C6L7U1 Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus OX=34305 GN=CERBERUS PE=2 SV=2 0
TrEMBL A0A6A6NHU6 BRISC and BRCA1-A complex member 2 OS=Hevea brasiliensis OX=3981 GN=GH714_016321 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 6 jg11768, jg11769, jg11770, jg11771, jg31633, jg31634
Anacardiaceae Pistacia vera 2 pistato.v30049320, pistato.v30256780
Apiaceae Apium graveolens 3 Ag2G02459, Ag3G02527, Ag8G00225
Arecaceae Cocos nucifera 2 COCNU_03G011900, COCNU_07G002000
Arecaceae Phoenix dactylifera 2 gene-LOC103702597, gene-LOC103706139
Asparagaceae Asparagus officinalis 3 AsparagusV1_01.1751.V1.1, AsparagusV1_03.2268.V1.1 ...
AsparagusV1_04.824.V1.1
Asteraceae Flaveria trinervia 3 Ftri4G07535, Ftri7G18227, Ftri8G01620
Casuarinaceae Casuarina equisetifolia 2 Ceq03G0877, Ceq06G1516
Casuarinaceae Casuarina glauca 2 Cgl03G0956, Cgl06G1574
Malvaceae Hibiscus hamabo Siebold & Zucc. 2 nbisL1-mrna-141, nbisL1-mrna-8648
Nitrariaceae Nitraria sibirica 2 evm.TU.LG06.710, evm.TU.LG07.1111
Plantaginaceae Plantago ovata 2 Pov_00003863, Pov_00020671
Poaceae Echinochloa crus-galli 4 AH02.91, BH01.509, BH02.80, CH02.102
Poaceae Eleusine coracana subsp. coracana 2 gene-QOZ80_1AG0000840, gene-QOZ80_1BG0049330
Poaceae Hordeum vulgare 1 HORVU.MOREX.r3.3HG0248980.1
Poaceae Lolium multiflorum 3 gene-QYE76_051444, gene-QYE76_051560, gene-QYE76_051566
Poaceae Oryza coarctata 2 Oco01G005770, Oco02G005870
Poaceae Oryza sativa 1 LOC_Os01g12930.1
Poaceae Paspalum vaginatum 1 gene-BS78_03G006500
Poaceae Puccinellia tenuiflora 1 Pt_Chr0204871
Poaceae Sporobolus alterniflorus 1 Chr21G016220
Poaceae Thinopyrum elongatum 1 Tel3E01G274000
Poaceae Triticum dicoccoides 2 gene_TRIDC3AG020830, gene_TRIDC3BG031130
Poaceae Triticum aestivum 3 TraesCS3A02G154900.1, TraesCS3B02G181200.1 ...
TraesCS3D02G162400.1
Poaceae Zea mays 1 Zm00001eb119290_P001
Poaceae Zoysia japonica 5 nbis-gene-24273, nbis-gene-24274, nbis-gene-32721 ...
nbis-gene-32722, nbis-gene-32723
Poaceae Zoysia macrostachya 2 Zma_g7183, Zma_g9505
Rhizophoraceae Bruguiera sexangula 3 evm.TU.Scaffold_10_RagTag.437, evm.TU.Scaffold_4_RagTag.1931 ...
evm.TU.Scaffold_7_RagTag.428
Rhizophoraceae Carallia pectinifolia 3 nbisL1-mrna-13099, nbisL1-mrna-16388, nbisL1-mrna-25645
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-12295, nbisL1-mrna-6585
Rhizophoraceae Ceriops zippeliana 4 nbisL1-mrna-13044, nbisL1-mrna-13045, nbisL1-mrna-16830 ...
nbisL1-mrna-16831
Rhizophoraceae Kandelia candel 4 add.evm.TU.utg000018l.158, add.evm.TU.utg000033l.95 ...
evm.TU.utg000002l.484, evm.TU.utg000008l.1103
Rhizophoraceae Kandelia obovata 3 Maker00000143, Maker00011993, Maker00014879
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-20232, nbisL1-mrna-23194
Salicaceae Populus euphratica 5 populus_peu15357, populus_peu21947, populus_peu33000 ...
populus_peu33001, populus_peu33002
Solanaceae Lycium barbarum 2 gene-LOC132603413, gene-LOC132622109
Solanaceae Solanum pennellii 3 gene-LOC107017250, gene-LOC107025502, gene-LOC114077896
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.