Basic Information
Locus ID:
pistato.v30047690
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
lysM domain receptor-like kinase 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 30269902 | 30277500 | + | pistato.v30047690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 123,831.10 Da | 39.72 | 79.88 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 282 | 315 | 1.34209E-7 | - |
| CDD | cd00054 | EGF_CA | 408 | 442 | 1.93377E-6 | - |
| CDD | cd00118 | LysM | 666 | 703 | 4.80272E-5 | IPR018392 |
| Pfam | PF07645 | Calcium-binding EGF domain | 408 | 449 | 5.0E-6 | IPR001881 |
| Pfam | PF00069 | Protein kinase domain | 853 | 1094 | 9.1E-42 | IPR000719 |
| Pfam | PF01476 | LysM domain | 666 | 704 | 5.0E-6 | IPR018392 |
| Pfam | PF07645 | Calcium-binding EGF domain | 282 | 319 | 1.6E-10 | IPR001881 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 31 | 84 | 3.0E-10 | IPR025287 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 279 | 317 | 9.04E-8 | - |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 408 | 442 | 2.8E-5 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 807 | 1097 | 4.02E-65 | IPR011009 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 662 | 715 | 4.4E-7 | IPR036779 |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 243 | 286 | 2.3E-6 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 794 | 893 | 6.8E-15 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 896 | 1116 | 2.1E-56 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 287 | 324 | 1.5E-9 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 405 | 449 | 3.9E-7 | - |
| SMART | SM00257 | LysM_2 | 660 | 704 | 0.0043 | IPR018392 |
| SMART | SM00179 | egfca_6 | 408 | 450 | 0.0026 | IPR001881 |
| SMART | SM00181 | egf_5 | 285 | 325 | 0.012 | IPR000742 |
| SMART | SM00181 | egf_5 | 232 | 281 | 8.7 | IPR000742 |
| SMART | SM00179 | egfca_6 | 229 | 281 | 0.13 | IPR001881 |
| SMART | SM00179 | egfca_6 | 282 | 325 | 1.1E-10 | IPR001881 |
| SMART | SM00181 | egf_5 | 410 | 450 | 2.2 | IPR000742 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 407 | 445 | 11.571682 | IPR000742 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 282 | 320 | 12.324657 | IPR000742 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 659 | 703 | 10.050194 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 820 | 1102 | 32.173943 | IPR000719 |
| ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 299 | 310 | - | IPR000152 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 282 | 308 | - | IPR018097 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 780 | 797 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 774 | 797 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 714 | 730 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 712 | 734 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_031270096.1 | protein LYK5-like isoform X2 [Pistacia vera] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5C7H5Z0 | Protein LYK5-like OS=Acer yangbiense OX=1000413 GN=EZV62_021001 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology