Basic Information
Locus ID:
pistato.v30047220
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 29800870 | 29803714 | - | pistato.v30047220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 80,380.00 Da | 30.72 | 93.66 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04053 | Coatomer WD associated region | 234 | 600 | 1.8E-106 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 127 | 162 | 9.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 44 | 77 | 0.0024 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 5 | 203 | 1.83E-34 | IPR036322 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 132 | 409 | 2.88E-11 | IPR011048 |
| Gene3D | G3DSA:1.25.40.470 | - | 501 | 591 | 4.5E-35 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 81 | 205 | 1.5E-39 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 80 | 1.2E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 123 | 162 | 4.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 165 | 203 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 40 | 79 | 3.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 37 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 122 | 22.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 130 | 171 | 14.752563 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 130 | 162 | 11.787407 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 77 | 8.971213 | IPR001680 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21390.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_031268986.1 | coatomer subunit alpha-2-like [Pistacia vera] | 0 |
| Q9SJT9 | Coatomer subunit alpha-2 OS=Arabidopsis thaliana OX=3702 GN=At2g21390 PE=2 SV=1 | 0 | |
| TrEMBL | A0A834G8B8 | Coatomer subunit alpha OS=Rhododendron simsii OX=118357 GN=RHSIM_Rhsim11G0182000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 4 | Sgl43929, Sgl43938, Sgl48695, Sgl48702 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30047220, pistato.v30159560 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G004000 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g00570.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g017100.2N |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g36000 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g10250 |