Basic Information
Locus ID:
pistato.v30045260
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
substituted 4 bases at 4 genomic stop codons
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 28054715 | 28059453 | + | pistato.v30045260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 121,540.88 Da | 29.90 | 88.93 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11314 | AmyAc_arch_bac_plant_AmyA | 50 | 397 | 3.41658E-171 | - |
| Pfam | PF01535 | PPR repeat | 588 | 613 | 0.71 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 711 | 739 | 0.55 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 683 | 709 | 0.53 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 616 | 646 | 2.0E-5 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 910 | 957 | 2.7E-7 | IPR002885 |
| Pfam | PF07821 | Alpha-amylase C-terminal beta-sheet domain | 389 | 443 | 1.2E-14 | IPR012850 |
| Pfam | PF13041 | PPR repeat family | 513 | 554 | 3.2E-7 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 884 | 907 | 0.075 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 812 | 857 | 3.9E-8 | IPR002885 |
| Pfam | PF00128 | Alpha amylase, catalytic domain | 73 | 244 | 2.4E-15 | IPR006047 |
| SUPERFAMILY | SSF51011 | Glycosyl hydrolase domain | 391 | 443 | 2.99E-15 | - |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 50 | 385 | 4.02E-79 | IPR017853 |
| Gene3D | G3DSA:2.60.40.1180 | - | 391 | 439 | 1.3E-21 | IPR013780 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 574 | 669 | 2.7E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 440 | 564 | 1.1E-15 | IPR011990 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 48 | 390 | 7.9E-149 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 760 | 869 | 2.2E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 884 | 1046 | 1.1E-31 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 670 | 759 | 5.1E-12 | IPR011990 |
| SMART | SM00642 | aamy | 48 | 386 | 1.9E-54 | IPR006047 |
| SMART | SM00810 | alpha-amyl_c2 | 387 | 447 | 4.6E-26 | IPR012850 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 616 | 649 | 1.6E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 812 | 845 | 1.7E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 914 | 946 | 5.4E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 515 | 549 | 2.3E-7 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 614 | 648 | 10.47906 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 911 | 945 | 10.55579 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 810 | 844 | 10.840783 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 513 | 547 | 12.189023 | IPR002885 |
| PRINTS | PR00110 | Alpha-amylase signature | 324 | 336 | 4.6E-5 | IPR006046 |
| PRINTS | PR00110 | Alpha-amylase signature | 220 | 231 | 4.6E-5 | IPR006046 |
| PRINTS | PR00110 | Alpha-amylase signature | 128 | 139 | 4.6E-5 | IPR006046 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G04860.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021601526.2 | pentatricopeptide repeat-containing protein At2g04860 [Manihot esculenta] | 0 |
| P17859 | Alpha-amylase OS=Vigna mungo OX=3915 GN=AMY1.1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5C7H613 | alpha-amylase OS=Acer yangbiense OX=1000413 GN=EZV62_021579 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg11975 |
| Aizoaceae | Mesembryanthemum crystallinum | 8 | gene_17112, gene_17902, gene_18983, gene_18984, gene_20013 ... |
| Amaranthaceae | Atriplex hortensis | 8 | Ah009601, Ah009602, Ah009611, Ah017759, Ah017761, Ah017762 ... |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_9g213260, BVRB_9g213270, BVRB_9g213280, BVRB_9g213370 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg12301, Sbi_jg47289, Sbi_jg47292 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg21560, Seu_jg21562 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55525, Sgl60745 |
| Amaranthaceae | Chenopodium album | 12 | gene:ENSEOMG00000008859, gene:ENSEOMG00000013627 ... |
| Amaranthaceae | Chenopodium quinoa | 7 | CQ.Regalona.r1.7BG0002320, CQ.Regalona.r1.7BG0002330 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30045260 |
| Apiaceae | Apium graveolens | 1 | Ag5G02491 |
| Arecaceae | Cocos nucifera | 2 | scaffold000431G000020, scaffold000431G000030 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103722582, gene-LOC103722583, gene-LOC120104902 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1812.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G22637 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G25000.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025232m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g23000.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g012250.2N, BniB05g021450.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G2110, Ceq07G2147 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl03G2251, Cgl07G2375, Cgl07G2376 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1267 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2122, evm.TU.LG06.435 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027632 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb2G12055, Lb2G12058, Lb4G21549, Lb7G35566, Lb7G35567 |
| Poaceae | Echinochloa crus-galli | 29 | AH02.2502, AH03.2166, AH03.2167, AH06.2731, AH06.2968 ... |
| Poaceae | Eleusine coracana subsp. coracana | 19 | gene-QOZ80_2AG0146880, gene-QOZ80_2AG0146890 ... |
| Poaceae | Hordeum vulgare | 12 | HORVU.MOREX.r3.5HG0486500.1, HORVU.MOREX.r3.6HG0617430.1 ... |
| Poaceae | Lolium multiflorum | 8 | gene-QYE76_005697, gene-QYE76_005699, gene-QYE76_025612 ... |
| Poaceae | Oryza coarctata | 11 | Oco03G022560, Oco04G023220, Oco12G017370, Oco15G012800 ... |
| Poaceae | Oryza sativa | 7 | LOC_Os02g52700.1, LOC_Os02g52710.1, LOC_Os06g49970.2 ... |
| Poaceae | Paspalum vaginatum | 7 | gene-BS78_01G178100, gene-BS78_02G204300, gene-BS78_K053500 ... |
| Poaceae | Puccinellia tenuiflora | 8 | Pt_Chr0104496, Pt_Chr0104497, Pt_Chr0203158, Pt_Chr0203159 ... |
| Poaceae | Sporobolus alterniflorus | 10 | Chr02G033240, Chr05G000580, Chr09G019110, Chr13G003340 ... |
| Poaceae | Thinopyrum elongatum | 9 | Tel4E01G479600, Tel5E01G385800, Tel5E01G386100 ... |
| Poaceae | Triticum dicoccoides | 18 | gene_TRIDC4BG049100, gene_TRIDC5AG037650 ... |
| Poaceae | Triticum aestivum | 30 | TraesCS4B02G285400.1, TraesCS4B02G285600.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb038060_P001, Zm00001eb100790_P001 ... |
| Poaceae | Zoysia japonica | 11 | nbis-gene-17202, nbis-gene-17204, nbis-gene-19668 ... |
| Poaceae | Zoysia macrostachya | 8 | Zma_g14498, Zma_g17213, Zma_g22841, Zma_g24217, Zma_g24218 ... |
| Portulacaceae | Portulaca oleracea | 13 | evm.TU.LG01.549, evm.TU.LG02.710, evm.TU.LG02.712 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g30550 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.954 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-8869 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20664, nbisL1-mrna-20665 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.301 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003502 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11424 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23829 |
| Salicaceae | Populus euphratica | 1 | populus_peu31978 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132627863, gene-LOC132627865 |
| Solanaceae | Solanum chilense | 2 | SOLCI002762200, SOLCI004793700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013022 |
| Tamaricaceae | Reaumuria soongarica | 4 | gene_10148, gene_10149, gene_10944, gene_8015 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2210 |