Basic Information
Locus ID:
pistato.v30042230
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 24128200 | 24139396 | - | pistato.v30042230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 103,260.42 Da | 37.33 | 83.56 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 155 | 295 | 9.73462E-33 | - |
| CDD | cd10316 | RGL4_M | 622 | 714 | 1.64995E-20 | IPR029413 |
| CDD | cd10317 | RGL4_C | 726 | 899 | 3.77084E-45 | - |
| CDD | cd10316 | RGL4_M | 46 | 149 | 6.27961E-32 | IPR029413 |
| CDD | cd10320 | RGL4_N | 302 | 592 | 2.08551E-64 | - |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 724 | 898 | 2.2E-44 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 663 | 710 | 1.9E-10 | IPR029413 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 73 | 145 | 1.0E-24 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 153 | 297 | 4.2E-28 | IPR029411 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 301 | 491 | 1.2E-78 | IPR010325 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 619 | 711 | 1.94E-6 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 721 | 899 | 7.23E-41 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 305 | 581 | 6.91E-7 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 42 | 146 | 3.33E-11 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 152 | 301 | 5.78E-29 | IPR008979 |
| Gene3D | G3DSA:2.60.40.1120 | - | 43 | 147 | 6.2E-8 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 293 | 571 | 3.6E-7 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 722 | 899 | 2.4E-15 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09880.4 | - | 0 |
| RefSeq | XP_011016984.1 | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105120478 [Populus euphratica] | 0 |
| TrEMBL | A0A5C7H6M4 | rhamnogalacturonan endolyase OS=Acer yangbiense OX=1000413 GN=EZV62_021803 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology